University of Minnesota
CSE Public Computer Classrooms and Labs
/

Common UNIX Software

The following categories contain the most common UNIX software used in CSE Labs. Visit this help page to learn how to load modules. If you don’t see what you’re looking for, check the list of all available UNIX software modules. Email operator [at] cselabs.umn.edu to request software or a different version of existing software.

Bioinformatics

  • BLAST
    • Already installed: blast2
  • Cytoscape
    • Module: java/cytoscape
  • Jmol
    • Already installed: jmol
  • QIIME
    • Module: soft/qiime
  • Scaffold
    • Module: soft/scaffold

Data Mining

  • Weka
    • Module: java/weka

Databases

  • MongoDB
    • Module: soft/mongodb
  • MySQL
    • Module: soft/mysql
  • Oracle Database
    • Module: soft/oracle
  • PostgreSQL
    • Module: soft/postgres

EDA/ECAD

  • Agilent ADS
    • Module: ecad/ads
  • Cadence
    • Modules: ecad/cadence/IC, ecad/cadence/ICC, ecad/cadence/INCISIV, ecad/cadence/IUS, ecad/cadence/LDV, ecad/cadence/SOC
  • GTKWave
    • Already installed: gtkwave
  • Icarus Verilog
    • Already installed: iverilog
  • SESC
    • Module: soft/sesc
  • SimpleScalar Simple Sim
    • Module: ecad/simplesim
  • Synopsys CosmosScope
    • Module: ecad/cosmoscope
  • Synopsys HSPICE
    • Module: ecad/hspice
  • Synopsys VCS
    • Module: ecad/vcs

Editors/IDE

  • Anjuta
    • Module: soft/anjuta
  • Bluefish
    • Already installed: bluefish
  • Code::Blocks
    • Already installed: codeblocks
  • Eclipse
    • Module: java/eclipse
  • Emacs
    • Already installed: emacs
  • Geany
    • Module: soft/geany
  • gedit
    • Already installed: gedit
  • KDevelop
    • Already installed: kdevelop
  • nano
    • Already installed: nano
  • NetBeans
    • Module: java
  • vi
    • Already installed: vi
  • XEmacs
    • Already installed: xemacs

Email

  • Alpine
    • Already installed: pine
  • Thunderbird
    • Already installed: thunderbird

File Synchronization

  • Unison
    • Module: soft/unison

Geoinformatics

  • QGIS
    • Module: soft/qgis

Graphics

  • Blender
    • Module: soft/blender
  • GIMP
    • Already installed: gimp
  • GLC_Player
    • Module: soft/glc_player
  • Inkscape
    • Already installed: inkscape
  • Ipe
    • Already installed: ipe
  • SDia
    • Module: soft/dia

GUI Toolkit

  • GTK
    • Module: soft/gtk
  • QT
    • Module: soft/qt
  • Tcl/Tk
    • Module: soft/tcl

Math

  • MATLAB with dozens of toolboxes
    • Already installed: matlab
  • Mathematica
    • Module: math/mathematica
  • Octave
    • Module: math/octave
  • Qhull
    • Already installed: qhull
  • Sage
    • Module: math/sage

Networking

  • ns-3
    • Module: soft/ns3

Office Software

  • Gnumeric
    • Already installed: gnumeric
  • Libre Office
    • Already installed: libreoffice
  • Scribus
    • Already installed: scribus

Parallel Computing

  • MPICH
    • Module: hpc/mpi
  • Open MPI
    • Module: hpc/openmpi

PDF Readers

  • Adobe Reader
    • Already installed: acroread
  • ePDFView
    • Already installed: epdfview
  • Evince
    • Already installed: evince
  • xpdf
    • Already installed: xpdf

Programming

Java

  • Apache ANT
    • Module: java/ant
  • Apache Maven
    • Module: java/maven
  • Java Development Kit (Oracle)
    • Module: java

JavaScript

  • Node.js
    • Module: soft/nodejs

Languages

  • C, C++ (Clang)
    • Module: soft/llvm+clang
  • C, C++ and Fortran (GCC)
    • Module: soft/gcc
  • D (dmd compiler)
    • Module: soft/dmd
  • Free Pascal
    • Module: soft/fpc
  • Go
    • Module: soft/go
  • Guile
    • Module: soft/guile
  • Haskell
    • Module: soft/haskell
  • Icon
    • Module: soft/icon
  • Lua
    • Module: soft/lua
  • MIT Scheme
    • Module: scheme
  • OCaml
    • Module: soft/ocaml
  • Perl
    • Module: soft/perl
  • PHP
    • Already installed: php
  • Processing
    • Module: soft/processing
  • Python with dozens of modules
    • Module: soft/python
  • R
    • Module: soft/r
  • Racket
    • Module: scheme/racket
  • Ruby
    • Module: soft/ruby
  • SML/NJ
    • Module: soft/sml
  • STklos
    • Module: soft/stklos

Tools

  • GNU Scientific Library
    • Module: soft/gsl
  • NuSMV
    • Module: soft/nusmv
  • SWIG
    • Already installed: swig
  • Valgrind
    • Already installed: valgrind

Remote Connection Clients

  • Rdesktop
    • Already installed: rdesktop
  • Remmina (including NX plugin)
    • Already installed: remmina

Revision Control

  • CVS
    • Already installed: cvs
  • Git
    • Already installed: git
  • Mercurial
    • Module: soft/mercurial
  • RCS
    • Already installed: rcs
  • Subversion
    • Modules: soft/subversion/1.5-latest, soft/subversion/1.6-latest, soft/subversion/1.7-latest

Robotics

  • Player/Stage
    • Module: soft/stage
  • Pyro
    • Module: soft/pyrobot
  • ROS
    • Module: soft/ros

Software Development Kits

  • Android SDK
    • Module: soft/android
  • CUDA
    • Installed on parallel-1.cselabs.umn.edu through parallel-8.cselabs.umn.edu in /usr/local/cuda
  • GPU Ocelot
    • Module: soft/gpuocelot
  • WebKit
    • Module: soft/webkit

TeX

  • Kile
    • Already installed: kile
  • TeX Live
    • Module: soft/texlive

Visualization/Computer Vision

  • OpenCV
    • Module: soft/opencv
  • Tecplot
    • Module: soft/tecplot
  • Visit
    • Module: soft/visit
  • VXL
    • Module: soft/vxl

Web Browsers

  • Chrome
    • Already installed: chrome
  • Firefox
    • Already installed: firefox
  • Lynx
    • Already installed: lynx
Contact: 1-201 Keller Hall, 200 Union St SE Minneapolis, MN 55455   Phone: (612) 625-0876   Email: operator@cselabs.umn.edu